Transcript: lnc-MANSC4-3:3

Basic information

LNCipedia transcript ID: lnc-MANSC4-3:3 
LNCipedia gene ID: lnc-MANSC4-3
Ensembl Gene ID: ENSG00000256377
Ensembl Transcript ID: ENST00000536922
Location (hg38): chr12:27696556-27704411
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 672 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536922.1; RP11-1060J15.4-002; OTTHUMT00000402892.1; NONHSAT027448; ENST00000536922.5
Alternative gene names: ENSG00000256377.1; RP11-1060J15.4; OTTHUMG00000169211.1; ENSG00000256377.5; AC009509.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.9646 non-coding 
CPAT coding probability 5.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MANSC4-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MANSC4-3:3
4.0 lnc-MANSC4-3:3
4.1 lnc-MANSC4-3:3
5.0 lnc-MANSC4-3:3
5.1 lnc-WBP11-106:7
5.2 lnc-MANSC4-3:3