Transcript: lnc-MANSC4-4:1

Basic information

LNCipedia transcript ID: lnc-MANSC4-4:1 
LNCipedia gene ID: lnc-MANSC4-4
Ensembl Gene ID: ENSG00000248100
Ensembl Transcript ID: ENST00000506925
Location (hg38): chr12:27547050-27552773
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2639 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506925; ENST00000506925.2; RP11-709A23.1-001; OTTHUMT00000402888.1; NONHSAT027444
Alternative gene names: ENSG00000248100; RP11-709A23.1; ENSG00000248100.2; OTTHUMG00000169208.1; AC087257.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.8441 non-coding 
CPAT coding probability 17.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MANSC4-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MANSC4-1:2
3.1 lnc-MANSC4-4:1
4.0 lnc-MANSC4-4:1
4.1 lnc-MANSC4-4:1
5.0 lnc-MANSC4-4:1
5.1 lnc-WBP11-103:1
5.2 lnc-MANSC4-4:1