Transcript: lnc-MAP1LC3B-1:5

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B-1:5 
LNCipedia gene ID: lnc-MAP1LC3B-1
Ensembl Gene ID: ENSG00000270006
Ensembl Transcript ID: ENST00000602282
RefSeq ID: NR_135180
Location (hg38): chr16:87317509-87318043
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 401 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000602282.2; NR_135180.1
Alternative gene names: ENSG00000270006.2; RP11-178L8.7; AC010531.6; LOC101928659


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -226.3645 non-coding 
CPAT coding probability 8.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MAP1LC3B-1:5
4.1 lnc-MAP1LC3B-1:5
5.0 lnc-MAP1LC3B-1:5
5.1 lnc-MAP1LC3B-1:5
5.2 lnc-MAP1LC3B-1:5