Transcript: lnc-MAP1LC3B-3:23

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B-3:23 
LNCipedia gene ID: lnc-MAP1LC3B-3
RefSeq ID: NR_110939
Location (hg38): chr16:87212115-87226430
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1454 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110939.1
Alternative gene names: LOC101928708


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.8813 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B-3:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-MAP1LC3B-14:2
5.1 lnc-MAP1LC3B-14:2
5.2 lnc-MAP1LC3B-3:23