Transcript: lnc-MAP1LC3B-5:1

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B-5:1 
LNCipedia gene ID: lnc-MAP1LC3B-5
Location (hg38): chr16:87066705-87069748
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 460 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000566798.1; RP11-134D3.2-001; OTTHUMT00000430785.1; NONHSAT144249
Alternative gene names: ENSG00000261363.1; RP11-134D3.2; OTTHUMG00000175679.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -238.909 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP1LC3B-5:1
4.0 lnc-MAP1LC3B-5:1
4.1 lnc-MAP1LC3B-5:1
5.0 lnc-MAP1LC3B-5:1
5.1 lnc-MAP1LC3B-5:1
5.2 lnc-MAP1LC3B-5:1