Transcript: lnc-MAP1LC3B-8:1

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B-8:1 
LNCipedia gene ID: lnc-MAP1LC3B-8
Ensembl Gene ID: ENSG00000269901
Ensembl Transcript ID: ENST00000602779
Location (hg38): chr16:87362536-87367476
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 450 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT144283; ENST00000602779.1
Alternative gene names: ENSG00000269901.1; RP11-178L8.9; AC010531.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.8719 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP1LC3B-8:1
4.0 lnc-MAP1LC3B-8:1
4.1 lnc-MAP1LC3B-8:1
5.0 lnc-MAP1LC3B-8:1
5.1 lnc-MAP1LC3B-8:1
5.2 lnc-MAP1LC3B-8:1