Transcript: lnc-MAP1LC3B2-11:1

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-11:1 
LNCipedia gene ID: lnc-MAP1LC3B2-11
Ensembl Gene ID: ENSG00000275898
Ensembl Transcript ID: ENST00000621942
Location (hg38): chr12:116580974-116583672
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2699 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621942.1
Alternative gene names: ENSG00000275898.1; RP11-497G19.7; AC125603.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.1292 non-coding 
CPAT coding probability 7.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MAP1LC3B2-11:1
4.1 lnc-MAP1LC3B2-11:1
5.0 lnc-MAP1LC3B2-11:1
5.1 lnc-MAP1LC3B2-11:1
5.2 lnc-MAP1LC3B2-11:1