Transcript: lnc-MAP1LC3B2-28:14

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:14 
HGNC Gene Symbol: lnc-MAP1LC3B2-28    
HGNC Full Gene Name: long intergenic non-protein coding RNA 173
Ensembl Gene ID: ENSG00000196668
Ensembl Transcript ID: ENST00000489452
Location (hg38): chr12:116533468-116534359
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000489452; TCONS_00020236; ENST00000489452.1; LINC00173-003; OTTHUMT00000349522.1; NONHSAT030946
Alternative gene names: ENSG00000196668; XLOC_009897; linc-MAP1LC3B2-2; RP11-809C9.1; ENSG00000196668.3; LINC00173; OTTHUMG00000157726.1; FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.2202 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:14 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP1LC3B2-2:5
3.1 lnc-MAP1LC3B2-2:5
4.0 LINC00173:7
4.1 LINC00173:7
5.0 LINC00173:7
5.1 lnc-MAP1LC3B2-14:14
5.2 lnc-MAP1LC3B2-28:14