Transcript: lnc-MAP1LC3B2-28:20

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:20 
LNCipedia gene ID: lnc-MAP1LC3B2-28
Location (hg38): chr12:116544869-116545106
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 238 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT030951
Alternative gene names: FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:20 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP1LC3B2-8:1
4.0 lnc-MAP1LC3B2-8:1
4.1 LINC00173:20
5.0 LINC00173:20
5.1 lnc-MAP1LC3B2-14:20
5.2 lnc-MAP1LC3B2-28:20