Transcript: lnc-MAP1LC3B2-28:6

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:6 
HGNC Gene Symbol: lnc-MAP1LC3B2-28    
HGNC Full Gene Name: long intergenic non-protein coding RNA 173
Ensembl Gene ID: ENSG00000196668
Ensembl Transcript ID: ENST00000470091
RefSeq ID: NR_027346
Location (hg38): chr12:116533435-116536513
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 435 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000470091; ENST00000470091.1; LINC00173-001; OTTHUMT00000349520.1; NONHSAT030944; NR_027346; NR_027346.1
Alternative gene names: ENSG00000196668; RP11-809C9.1; ENSG00000196668.3; LINC00173; OTTHUMG00000157726.1; FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.861 non-coding 
CPAT coding probability 3.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:6 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP1LC3B2-2:2
3.1 lnc-MAP1LC3B2-2:2
4.0 LINC00173:4
4.1 LINC00173:4
5.0 LINC00173:4
5.1 lnc-MAP1LC3B2-14:6
5.2 lnc-MAP1LC3B2-28:6