Transcript: lnc-MAP1LC3B2-28:8

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:8 
LNCipedia gene ID: lnc-MAP1LC3B2-28
Location (hg38): chr12:116533438-116536723
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2642 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020581; NONHSAT030945
Alternative gene names: XLOC_009897; linc-MAP1LC3B2-2; FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2084 non-coding 
CPAT coding probability 4.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:8 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP1LC3B2-2:4
3.1 lnc-MAP1LC3B2-2:4
4.0 LINC00173:6
4.1 LINC00173:6
5.0 LINC00173:6
5.1 lnc-MAP1LC3B2-14:8
5.2 lnc-MAP1LC3B2-28:8