Transcript: lnc-MAP1LC3B2-2:10

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-2:10 
LNCipedia gene ID: lnc-MAP1LC3B2-2
Ensembl Gene ID: ENSG00000258280
Ensembl Transcript ID: ENST00000548457
Location (hg38): chr12:115576676-115577615
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548457; ENST00000548457.1; RP11-1028N23.2-001; OTTHUMT00000403874.1; NONHSAT030911
Alternative gene names: ENSG00000258280; RP11-1028N23.2; ENSG00000258280.1; OTTHUMG00000169400.1; AC009803.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.7987 non-coding 
CPAT coding probability 5.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-116D17.1.1-2:2
3.1 lnc-RP11-116D17.1.1-2:2
4.0 lnc-RP11-116D17.1.1-2:2
4.1 lnc-RP11-116D17.1.1-2:2
5.0 lnc-RP11-116D17.1.1-2:2
5.1 lnc-MAP1LC3B2-22:2
5.2 lnc-MAP1LC3B2-2:10