Transcript: lnc-MAP1LC3B2-2:9

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-2:9 
LNCipedia gene ID: lnc-MAP1LC3B2-2
Ensembl Gene ID: ENSG00000258108
Ensembl Transcript ID: ENST00000550378
Location (hg38): chr12:115569664-115581739
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 665 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550378; ENST00000550378.1; RP11-1028N23.3-001; OTTHUMT00000403873.1; NONHSAT030910
Alternative gene names: ENSG00000258108; RP11-1028N23.3; ENSG00000258108.1; OTTHUMG00000169399.1; AC009803.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.1984 non-coding 
CPAT coding probability 38.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-116D17.1.1-2:1
3.1 lnc-RP11-116D17.1.1-2:1
4.0 lnc-RP11-116D17.1.1-2:1
4.1 lnc-RP11-116D17.1.1-2:1
5.0 lnc-RP11-116D17.1.1-2:1
5.1 lnc-MAP1LC3B2-22:1
5.2 lnc-MAP1LC3B2-2:9