Transcript: lnc-MAP1LC3C-1:1

Basic information

LNCipedia transcript ID: lnc-MAP1LC3C-1:1 
LNCipedia gene ID: lnc-MAP1LC3C-1
Location (hg38): chr1:242203555-242210523
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 462 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000425514.1; RP11-561I11.3-001; OTTHUMT00000096193.1; NONHSAT010564
Alternative gene names: ENSG00000232689.1; RP11-561I11.3; OTTHUMG00000039869.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3478 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3C-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP1LC3C-1:1
4.0 lnc-MAP1LC3C-1:1
4.1 lnc-MAP1LC3C-1:1
5.0 lnc-MAP1LC3C-1:1
5.1 lnc-CHML-5:1
5.2 lnc-MAP1LC3C-1:1