Transcript: lnc-MAP3K1-1:2

Basic information

LNCipedia transcript ID: lnc-MAP3K1-1:2 
LNCipedia gene ID: lnc-MAP3K1-1
Ensembl Gene ID: ENSG00000228650
Ensembl Transcript ID: ENST00000438117
Location (hg38): chr5:56770799-56772303
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 785 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT101551; ENST00000438117.2
Alternative gene names: ENSG00000228650.2; AC008940.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.1503 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP3K1-1:2
4.0 lnc-MAP3K1-1:2
4.1 lnc-MAP3K1-1:2
5.0 lnc-MAP3K1-1:2
5.1 lnc-GPBP1-15:2
5.2 lnc-MAP3K1-1:2