Transcript: lnc-MAP3K12-3:1

Basic information

LNCipedia transcript ID: lnc-MAP3K12-3:1 
LNCipedia gene ID: lnc-MAP3K12-3
Ensembl Gene ID: ENSG00000270175
Ensembl Transcript ID: ENST00000602306
Location (hg38): chr12:53500162-53500936
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 775 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT028473; ENST00000602306.1
Alternative gene names: ENSG00000270175.1; RP11-793H13.11; AC023509.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -237.3497 non-coding 
CPAT coding probability 6.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K12-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP3K12-3:1
4.0 lnc-MAP3K12-3:1
4.1 lnc-MAP3K12-3:1
5.0 lnc-MAP3K12-3:1
5.1 lnc-MAP3K12-3:1
5.2 lnc-MAP3K12-3:1