Transcript: lnc-MAP3K4-42:2

Basic information

LNCipedia transcript ID: lnc-MAP3K4-42:2 
LNCipedia gene ID: lnc-MAP3K4-42
RefSeq ID: NR_134593
Location (hg38): chr6:161470977-161484045
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 705 bp
Exons: 4
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134593.1
Alternative gene names: LOC105378098


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -11.7072 non-coding 
CPAT coding probability 14.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K4-42:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SYTL3-42:2
5.1 lnc-SYTL3-42:2
5.2 lnc-MAP3K4-42:2