Transcript: lnc-MAP3K4-6:2

Basic information

LNCipedia transcript ID: lnc-MAP3K4-6:2 
LNCipedia gene ID: lnc-MAP3K4-6
Location (hg38): chr6:161435102-161450166
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5211 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000086813.1|HBMT00001242681.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.1047 non-coding 
CPAT coding probability 2.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K4-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MAP3K4-6:2
5.0 lnc-MAP3K4-6:2
5.1 lnc-SYTL3-41:2
5.2 lnc-MAP3K4-6:2