Transcript: lnc-MAP3K6-1:1

Basic information

LNCipedia transcript ID: lnc-MAP3K6-1:1 
LNCipedia gene ID: lnc-MAP3K6-1
Location (hg38): chr1:27306766-27307787
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 418 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000474826.1; RP11-4K3__A.2-001; OTTHUMT00000012807.1; NONHSAT001879
Alternative gene names: ENSG00000240397.1; RP11-4K3__A.2; OTTHUMG00000004408.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.6045 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K6-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP3K6-1:1
4.0 lnc-MAP3K6-1:1
4.1 lnc-MAP3K6-1:1
5.0 lnc-MAP3K6-1:1
5.1 lnc-MAP3K6-2:1
5.2 lnc-MAP3K6-1:1