Transcript: lnc-MAP3K8-195:2

Basic information

LNCipedia transcript ID: lnc-MAP3K8-195:2 
LNCipedia gene ID: lnc-MAP3K8-195
Ensembl Gene ID: ENSG00000230720
Ensembl Transcript ID: ENST00000416310
Location (hg38): chr10:30723251-30723740
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 408 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017808; ENST00000416310; ENST00000416310.1; RP11-14C22.6-001; OTTHUMT00000047438.1; NONHSAT012590
Alternative gene names: XLOC_008439; linc-ZEB1-2; ENSG00000230720; RP11-14C22.6; ENSG00000230720.1; OTTHUMG00000017902.1; AL451107.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -298.617 non-coding 
CPAT coding probability 4.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K8-195:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP3K8-3:1
3.1 lnc-MAP3K8-4:1
4.0 lnc-MAP3K8-4:1
4.1 lnc-MAP3K8-4:1
5.0 lnc-MAP3K8-4:1
5.1 lnc-NPY4R2-195:2
5.2 lnc-MAP3K8-195:2