Transcript: lnc-MAP3K8-1:1

Basic information

LNCipedia transcript ID: lnc-MAP3K8-1:1 
LNCipedia gene ID: lnc-MAP3K8-1
Ensembl Gene ID: ENSG00000230298
Ensembl Transcript ID: ENST00000426067
Location (hg38): chr10:30576699-30580182
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 378 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017805; ENST00000426067; ENST00000426067.1; RP11-253D19.2-001; OTTHUMT00000047432.1; NONHSAT012584
Alternative gene names: XLOC_008436; linc-ZEB1-4; ENSG00000230298; RP11-253D19.2; ENSG00000230298.1; OTTHUMG00000017897.1; AL590068.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.4176 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP3K8-1:1
3.1 lnc-MAP3K8-1:1
4.0 lnc-MAP3K8-1:1
4.1 lnc-MAP3K8-1:1
5.0 lnc-MAP3K8-1:1
5.1 lnc-NPY4R2-201:1
5.2 lnc-MAP3K8-1:1