Transcript: lnc-MAP3K9-3:12

Basic information

LNCipedia transcript ID: lnc-MAP3K9-3:12 
LNCipedia gene ID: lnc-MAP3K9-3
Location (hg38): chr14:71293967-71310569
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 520 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022782; NONHSAT037620
Alternative gene names: XLOC_011064; linc-MAP3K9-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.2523 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K9-3:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP3K9-2:10
3.1 lnc-MAP3K9-3:12
4.0 lnc-MAP3K9-3:12
4.1 lnc-MAP3K9-3:12
5.0 lnc-MAP3K9-3:12
5.1 lnc-ABCD4-42:29
5.2 lnc-MAP3K9-3:12