Transcript: lnc-MAP3K9-3:14

Basic information

LNCipedia transcript ID: lnc-MAP3K9-3:14 
LNCipedia gene ID: lnc-MAP3K9-3
Location (hg38): chr14:71292718-71295362
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 525 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000554841.1; RP1-261D10.2-003; OTTHUMT00000413049.1; NONHSAT037614
Alternative gene names: ENSG00000259146.1; RP1-261D10.2; OTTHUMG00000171342.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.2523 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K9-3:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP3K9-3:14
4.0 lnc-MAP3K9-3:14
4.1 lnc-MAP3K9-3:14
5.0 lnc-MAP3K9-3:14
5.1 lnc-ABCD4-42:31
5.2 lnc-MAP3K9-3:14