Transcript: lnc-MAP3K9-3:3

Basic information

LNCipedia transcript ID: lnc-MAP3K9-3:3 
LNCipedia gene ID: lnc-MAP3K9-3
Location (hg38): chr14:71292725-71321814
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 513 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000555771.1; RP1-261D10.2-001; OTTHUMT00000413050.1
Alternative gene names: ENSG00000259146.1; RP1-261D10.2; OTTHUMG00000171342.1; ENSG00000259146.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -377.2599 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K9-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP3K9-3:3
4.0 lnc-MAP3K9-3:3
4.1 lnc-MAP3K9-3:3
5.0 lnc-MAP3K9-3:3
5.1 lnc-ABCD4-42:10
5.2 lnc-MAP3K9-3:3