Transcript: lnc-MAP3K9-3:5

Basic information

LNCipedia transcript ID: lnc-MAP3K9-3:5 
LNCipedia gene ID: lnc-MAP3K9-3
Location (hg38): chr14:71307191-71321165
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2081 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022786; NONHSAT037627
Alternative gene names: XLOC_011064; linc-MAP3K9-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.5086 non-coding 
CPAT coding probability 12.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K9-3:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP3K9-2:4
3.1 lnc-MAP3K9-3:5
4.0 lnc-MAP3K9-3:5
4.1 lnc-MAP3K9-3:5
5.0 lnc-MAP3K9-3:5
5.1 lnc-ABCD4-42:16
5.2 lnc-MAP3K9-3:5