Transcript: lnc-MAP6-1:3

Basic information

LNCipedia transcript ID: lnc-MAP6-1:3 
LNCipedia gene ID: lnc-MAP6-1
Location (hg38): chr11:75572035-75572783
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 511 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000525418.1; RP11-939C17.2-002; OTTHUMT00000383740.1; NONHSAT023111
Alternative gene names: ENSG00000254969.1; RP11-939C17.2; OTTHUMG00000165371.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.0648 non-coding 
CPAT coding probability 8.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP6-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP6-1:3
4.0 lnc-MAP6-1:3
4.1 lnc-MAP6-1:3
5.0 lnc-MAP6-1:3
5.1 lnc-WNT11-21:3
5.2 lnc-MAP6-1:3