Transcript: lnc-MAP7D2-1:2

Basic information

LNCipedia transcript ID: lnc-MAP7D2-1:2 
LNCipedia gene ID: lnc-MAP7D2-1
RefSeq ID: NR_024440
Location (hg38): chrX:19986817-19989779
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 628 bp
Exons: 2
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00016924; NONHSAT136443; NR_024440; NR_024440.1
Alternative gene names: XLOC_008126; linc-CXorf23; LOC729609


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.816 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP7D2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP7D2-1:2
3.1 lnc-MAP7D2-1:2
4.0 lnc-MAP7D2-1:2
4.1 lnc-MAP7D2-1:2
5.0 lnc-MAP7D2-1:2
5.1 lnc-PCSK1N-151:2
5.2 lnc-MAP7D2-1:2