Transcript: lnc-MAPK6-2:1

Basic information

LNCipedia transcript ID: lnc-MAPK6-2:1 
LNCipedia gene ID: lnc-MAPK6-2
Ensembl Gene ID: ENSG00000259178
Ensembl Transcript ID: ENST00000558343
Location (hg38): chr15:52082302-52086574
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 462 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558343.1; CTD-2184D3.3-001; OTTHUMT00000419384.1; NONHSAT043909
Alternative gene names: ENSG00000259178.1; CTD-2184D3.3; OTTHUMG00000172597.1; AC023906.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.7687 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAPK6-2:1 no no no no

Available literature

  1. Idogawa (2014), Identification and analysis of large intergenic non-coding RNAs regulated by p53 family members through a genome-wide analysis of p53-binding sites., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAPK6-2:1
4.0 lnc-MAPK6-2:1
4.1 lnc-MAPK6-2:1
5.0 lnc-MAPK6-2:1
5.1 lnc-CCNDBP1-120:1
5.2 lnc-MAPK6-2:1