Transcript: lnc-MAPK6-2:2

Basic information

LNCipedia transcript ID: lnc-MAPK6-2:2 
LNCipedia gene ID: lnc-MAPK6-2
Location (hg38): chr15:52083370-52086557
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 535 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023404; NONHSAT043910
Alternative gene names: XLOC_011252; linc-UNC13C-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.187 non-coding 
CPAT coding probability 4.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAPK6-2:2 no no no no

Available literature

  1. Idogawa (2014), Identification and analysis of large intergenic non-coding RNAs regulated by p53 family members through a genome-wide analysis of p53-binding sites., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAPK6-1:1
3.1 lnc-MAPK6-2:2
4.0 lnc-MAPK6-2:2
4.1 lnc-MAPK6-2:2
5.0 lnc-MAPK6-2:2
5.1 lnc-CCNDBP1-120:2
5.2 lnc-MAPK6-2:2