Transcript: lnc-MAPK6-4:1

Basic information

LNCipedia transcript ID: lnc-MAPK6-4:1 
LNCipedia gene ID: lnc-MAPK6-4
Location (hg38): chr15:52101592-52111028
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 513 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000544821.2; CTD-2184D3.4-001; OTTHUMT00000419385.1; NONHSAT043912
Alternative gene names: ENSG00000231111.3; CTD-2184D3.4; OTTHUMG00000172598.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.7569 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAPK6-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAPK6-4:1
4.0 lnc-MAPK6-4:1
4.1 lnc-MAPK6-4:1
5.0 lnc-MAPK6-4:1
5.1 lnc-CCNDBP1-122:1
5.2 lnc-MAPK6-4:1