Transcript: lnc-MAPK6-6:2

Basic information

LNCipedia transcript ID: lnc-MAPK6-6:2 
LNCipedia gene ID: lnc-MAPK6-6
Ensembl Gene ID: ENSG00000259709
Ensembl Transcript ID: ENST00000560613
Location (hg38): chr15:52138428-52140246
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 823 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560613.1; CTD-2184D3.7-002; OTTHUMT00000419389.1; NONHSAT043918
Alternative gene names: ENSG00000259709.1; CTD-2184D3.7; OTTHUMG00000172600.1; AC023906.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.6399 non-coding 
CPAT coding probability 5.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAPK6-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAPK6-6:2
4.0 lnc-MAPK6-6:2
4.1 lnc-MAPK6-6:2
5.0 lnc-MAPK6-6:2
5.1 lnc-CCNDBP1-124:2
5.2 lnc-MAPK6-6:2