Transcript: lnc-MAPKAP1-1:1

Basic information

LNCipedia transcript ID: lnc-MAPKAP1-1:1 
LNCipedia gene ID: lnc-MAPKAP1-1
Ensembl Gene ID: ENSG00000229582
Ensembl Transcript ID: ENST00000444800
Location (hg38): chr9:125743754-125745740
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 509 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015880; ENST00000444800.1; RP11-423C15.3-003; OTTHUMT00000054083.1
Alternative gene names: XLOC_007852; linc-MAPKAP1-4; ENSG00000229582.1; RP11-423C15.3; OTTHUMG00000020682.1; ENSG00000229582.2; ENSG00000229582.3; AL358074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.5401 non-coding 
CPAT coding probability 13.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAPKAP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAPKAP1-1:1
3.1 lnc-MAPKAP1-1:1
4.0 lnc-MAPKAP1-1:1
4.1 lnc-MAPKAP1-1:1
5.0 lnc-MAPKAP1-1:1
5.1 lnc-ZBTB6-55:10
5.2 lnc-MAPKAP1-1:1