Transcript: lnc-MAPKAP1-1:5

Basic information

LNCipedia transcript ID: lnc-MAPKAP1-1:5 
LNCipedia gene ID: lnc-MAPKAP1-1
Ensembl Gene ID: ENSG00000229582
Ensembl Transcript ID: ENST00000614664
Location (hg38): chr9:125744377-125746552
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2176 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000614664.1
Alternative gene names: ENSG00000229582.3; RP11-423C15.3; AL358074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -24.4225 non-coding 
CPAT coding probability 26.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAPKAP1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MAPKAP1-1:5
4.1 lnc-MAPKAP1-1:5
5.0 lnc-MAPKAP1-1:5
5.1 lnc-ZBTB6-55:2
5.2 lnc-MAPKAP1-1:5