Transcript: lnc-MARCH10-1:1

Basic information

LNCipedia transcript ID: lnc-MARCH10-1:1 
LNCipedia gene ID: lnc-MARCH10-1
Location (hg38): chr17:62935402-62966810
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000582505.1; RP11-180P8.1-001; OTTHUMT00000444762.1; NONHSAT055183
Alternative gene names: ENSG00000263931.1; RP11-180P8.1; OTTHUMG00000179100.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -240.3829 non-coding 
CPAT coding probability 4.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MARCH10-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MARCH10-1:1
4.0 lnc-MARCH10-1:1
4.1 lnc-MARCH10-1:1
5.0 lnc-MARCH10-1:1
5.1 lnc-CYB561-23:5
5.2 lnc-MARCH10-1:1