Transcript: lnc-MARCKS-3:1

Basic information

LNCipedia transcript ID: lnc-MARCKS-3:1 
LNCipedia gene ID: lnc-MARCKS-3
Location (hg38): chr6:113939628-113940048
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 367 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000451843.1; RP11-544L8__B.2-001; OTTHUMT00000041904.1; NONHSAT114579
Alternative gene names: ENSG00000226099.1; RP11-544L8__B.2; OTTHUMG00000015407.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.4533 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MARCKS-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MARCKS-3:1
4.0 lnc-MARCKS-3:1
4.1 lnc-MARCKS-3:1
5.0 lnc-MARCKS-3:1
5.1 lnc-RFPL4B-19:1
5.2 lnc-MARCKS-3:1