Transcript: lnc-MARCKSL1-1:1

Basic information

LNCipedia transcript ID: lnc-MARCKSL1-1:1 
LNCipedia gene ID: lnc-MARCKSL1-1
Location (hg38): chr1:32321198-32322561
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 763 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000458147.1; RP4-811H24.3-001; OTTHUMT00000020051.2; NONHSAT002195
Alternative gene names: ENSG00000235359.1; RP4-811H24.3; OTTHUMG00000007586.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.4065 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MARCKSL1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MARCKSL1-1:1
4.0 lnc-MARCKSL1-1:1
4.1 lnc-MARCKSL1-1:1
5.0 lnc-MARCKSL1-1:1
5.1 lnc-RNF19B-17:1
5.2 lnc-MARCKSL1-1:1