Transcript: lnc-MASP1-1:1

Basic information

LNCipedia transcript ID: lnc-MASP1-1:1 
LNCipedia gene ID: lnc-MASP1-1
Ensembl Gene ID: ENSG00000198491
Ensembl Transcript ID: ENST00000356133
RefSeq ID: NR_110052
Location (hg38): chr3:187197090-187207629
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2674 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000356133.3; RP11-208N14.4-001; OTTHUMT00000344279.1; NONHSAT093883; NR_110052; NR_110052.1
Alternative gene names: ENSG00000198491.3; RP11-208N14.4; OTTHUMG00000156463.1; AC007920.1; LOC101929106


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 176.9031 coding 
CPAT coding probability 61.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MASP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MASP1-1:1
4.0 lnc-MASP1-1:1
4.1 lnc-MASP1-1:1
5.0 lnc-MASP1-1:1
5.1 lnc-TBCCD1-14:1
5.2 lnc-MASP1-1:1