Transcript: lnc-MAST4-2:1

Basic information

LNCipedia transcript ID: lnc-MAST4-2:1 
LNCipedia gene ID: lnc-MAST4-2
Ensembl Gene ID: ENSG00000251206
Ensembl Transcript ID: ENST00000515077
Location (hg38): chr5:67268022-67270182
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 509 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009410; ENST00000515077; ENST00000515077.1; CTD-2187J20.1-001; OTTHUMT00000368614.1; NONHSAT101807
Alternative gene names: XLOC_004410; linc-PIK3R1-3; ENSG00000251206; CTD-2187J20.1; ENSG00000251206.1; OTTHUMG00000162351.1; AC010420.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.6737 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAST4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAST4-1:1
3.1 lnc-MAST4-2:1
4.0 lnc-MAST4-2:1
4.1 lnc-MAST4-2:1
5.0 lnc-MAST4-2:1
5.1 lnc-NLN-31:1
5.2 lnc-MAST4-2:1