Transcript: lnc-MAT1A-1:2

Basic information

LNCipedia transcript ID: lnc-MAT1A-1:2 
LNCipedia gene ID: lnc-MAT1A-1
Location (hg38): chr10:80181102-80204919
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 550 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT015236
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.2862 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAT1A-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAT1A-1:2
4.0 lnc-MAT1A-1:2
4.1 lnc-MAT1A-1:2
5.0 lnc-MAT1A-1:2
5.1 lnc-VSIR-106:2
5.2 lnc-MAT1A-1:2