Transcript: lnc-MAT2B-3:15

Basic information

LNCipedia transcript ID: lnc-MAT2B-3:15 
LNCipedia gene ID: lnc-MAT2B-3
Location (hg38): chr5:164470270-164551187
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 494 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010163; NONHSAT104939
Alternative gene names: XLOC_004626; linc-ODZ2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.8438 non-coding 
CPAT coding probability 4.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAT2B-3:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAT2B-3:2
3.1 lnc-MAT2B-3:15
4.0 lnc-MAT2B-3:15
4.1 lnc-MAT2B-3:15
5.0 lnc-MAT2B-3:15
5.1 lnc-ATP6V0E1-131:29
5.2 lnc-MAT2B-3:15