Transcript: lnc-MAT2B-3:16

Basic information

LNCipedia transcript ID: lnc-MAT2B-3:16 
LNCipedia gene ID: lnc-MAT2B-3
Ensembl Gene ID: ENSG00000241956
Ensembl Transcript ID: ENST00000522762
RefSeq ID: NR_105065
Location (hg38): chr5:164470279-164542984
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000522762.1; CTC-340A15.2-005; OTTHUMT00000370943.1; NONHSAT104940; NR_105065.1
Alternative gene names: ENSG00000241956.5; CTC-340A15.2; OTTHUMG00000162877.7; ENSG00000241956.9; AC109466.1; LOC102546299


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.8438 non-coding 
CPAT coding probability 4.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAT2B-3:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAT2B-3:16
4.0 lnc-MAT2B-3:16
4.1 lnc-MAT2B-3:16
5.0 lnc-MAT2B-3:16
5.1 lnc-ATP6V0E1-131:30
5.2 lnc-MAT2B-3:16