Transcript: lnc-MATN1-2:1

Basic information

LNCipedia transcript ID: lnc-MATN1-2:1 
LNCipedia gene ID: lnc-MATN1-2
Ensembl Gene ID: ENSG00000236335
Ensembl Transcript ID: ENST00000427319
Location (hg38): chr1:30409560-30411638
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 507 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000497; ENST00000427319; ENST00000427319.1; RP4-591L5.1-001; OTTHUMT00000010416.1; NONHSAT002048
Alternative gene names: XLOC_000767; linc-MECR-1; ENSG00000236335; RP4-591L5.1; ENSG00000236335.1; OTTHUMG00000003682.1; AL161638.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.497 non-coding 
CPAT coding probability 9.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MATN1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MATN1-2:1
3.1 lnc-MATN1-2:1
4.0 lnc-MATN1-2:1
4.1 lnc-MATN1-2:1
5.0 lnc-MATN1-2:1
5.1 lnc-MATN1-2:1
5.2 lnc-MATN1-2:1