Transcript: lnc-MB-11:5

Basic information

LNCipedia transcript ID: lnc-MB-11:5 
LNCipedia gene ID: lnc-MB-11
RefSeq ID: NR_126356
Location (hg38): chr22:35119824-35231056
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 648 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000423311.1; CTA-714B7.5-001; OTTHUMT00000320640.1; NONHSAT085041; NR_126356; NR_126356.1
Alternative gene names: ENSG00000233080.2; CTA-714B7.5; OTTHUMG00000150957.1; LINC01399;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.3792 non-coding 
CPAT coding probability 6.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MB-11:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MB-1:1
4.0 LINC01399:1
4.1 LINC01399:1
5.0 LINC01399:1
5.1 lnc-APOL3-13:5
5.2 lnc-MB-11:5