Transcript: lnc-MBD2-1:7

Basic information

LNCipedia transcript ID: lnc-MBD2-1:7 
LNCipedia gene ID: lnc-MBD2-1
Location (hg38): chr18:54355635-54357744
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 501 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026715; NONHSAT059346
Alternative gene names: XLOC_012845; linc-STARD6-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.0752 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MBD2-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STARD6-1:2
3.1 lnc-STARD6-1:2
4.0 lnc-STARD6-1:2
4.1 lnc-STARD6-1:2
5.0 lnc-STARD6-1:2
5.1 lnc-MBD2-1:5
5.2 lnc-MBD2-1:7