Transcript: lnc-MBD3-1:1

Basic information

LNCipedia transcript ID: lnc-MBD3-1:1 
LNCipedia gene ID: lnc-MBD3-1
Location (hg38): chr19:1573596-1575475
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1880 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT060338; ENST00000588960.1
Alternative gene names: ENSG00000267161.1; AC005943.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 53.2458 non-coding 
CPAT coding probability 68.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MBD3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MBD3-1:1
4.0 lnc-MBD3-1:1
4.1 lnc-MBD3-1:1
5.0 lnc-MBD3-1:1
5.1 lnc-ZNF77-82:1
5.2 lnc-MBD3-1:1