Transcript: lnc-MBOAT1-2:1

Basic information

LNCipedia transcript ID: lnc-MBOAT1-2:1 
LNCipedia gene ID: lnc-MBOAT1-2
Ensembl Gene ID: ENSG00000228412
Ensembl Transcript ID: ENST00000607810
Location (hg38): chr6:19802164-19804750
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1930 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011208; NONHSAT108009; ENST00000607810.1; ENST00000607810.5
Alternative gene names: XLOC_005634; linc-DEK-1; ENSG00000228412.2; RP4-625H18.2; ENSG00000228412.6; ENSG00000228412.7; AL022068.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.5457 non-coding 
CPAT coding probability 3.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MBOAT1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MBOAT1-2:1
3.1 lnc-MBOAT1-2:1
4.0 lnc-MBOAT1-2:1
4.1 lnc-MBOAT1-2:1
5.0 lnc-MBOAT1-2:1
5.1 lnc-C6orf62-95:15
5.2 lnc-MBOAT1-2:1