Transcript: lnc-MBOAT1-2:2

Basic information

LNCipedia transcript ID: lnc-MBOAT1-2:2 
LNCipedia gene ID: lnc-MBOAT1-2
Ensembl Gene ID: ENSG00000228412
Ensembl Transcript ID: ENST00000457670
Location (hg38): chr6:19803607-19804742
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 372 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011463; ENST00000457670; ENST00000457670.1; RP4-625H18.2-001; OTTHUMT00000039974.1
Alternative gene names: XLOC_005634; linc-DEK-1; ENSG00000228412; RP4-625H18.2; ENSG00000228412.1; OTTHUMG00000014330.1; ENSG00000228412.2; ENSG00000228412.6; ENSG00000228412.7; AL022068.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.5631 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MBOAT1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MBOAT1-2:2
3.1 lnc-MBOAT1-2:2
4.0 lnc-MBOAT1-2:2
4.1 lnc-MBOAT1-2:2
5.0 lnc-MBOAT1-2:2
5.1 lnc-C6orf62-95:17
5.2 lnc-MBOAT1-2:2