Transcript: lnc-MBOAT1-2:28

Basic information

LNCipedia transcript ID: lnc-MBOAT1-2:28 
LNCipedia gene ID: lnc-MBOAT1-2
Ensembl Gene ID: ENSG00000231662
Ensembl Transcript ID: ENST00000443504
Location (hg38): chr6:19290319-19321021
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 381 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011459; ENST00000443504; ENST00000443504.1; RP11-686D16.1-001; OTTHUMT00000039969.1; NONHSAT107988
Alternative gene names: XLOC_005631; linc-DEK-5; ENSG00000231662; RP11-686D16.1; ENSG00000231662.1; OTTHUMG00000014325.1; AL357052.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -336.5798 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MBOAT1-2:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MBOAT1-4:1
3.1 lnc-MBOAT1-6:1
4.0 lnc-MBOAT1-6:1
4.1 lnc-MBOAT1-2:28
5.0 lnc-MBOAT1-2:28
5.1 lnc-C6orf62-95:30
5.2 lnc-MBOAT1-2:28