Transcript: lnc-MCUR1-1:2

Basic information

LNCipedia transcript ID: lnc-MCUR1-1:2 
LNCipedia gene ID: lnc-MCUR1-1
Ensembl Gene ID: ENSG00000230631
Ensembl Transcript ID: ENST00000455973
Location (hg38): chr6:14229775-14231570
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011455; ENST00000455973; ENST00000455973.1; RP11-359N11.1-001; OTTHUMT00000039917.1
Alternative gene names: XLOC_005613; linc-CCDC90A-5; ENSG00000230631; RP11-359N11.1; ENSG00000230631.1; OTTHUMG00000014284.1; AL353152.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.8239 non-coding 
CPAT coding probability 15.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MCUR1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC90A-1:1
3.1 lnc-CCDC90A-1:1
4.0 lnc-CCDC90A-1:1
4.1 lnc-CCDC90A-1:1
5.0 lnc-CCDC90A-1:1
5.1 lnc-ECI2-272:2
5.2 lnc-MCUR1-1:2