Transcript: lnc-MDFIC2-6:1

Basic information

LNCipedia transcript ID: lnc-MDFIC2-6:1 
LNCipedia gene ID: lnc-MDFIC2-6
Location (hg38): chr3:70196894-70312726
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 778 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000567252.1; RP11-231I13.2-001; OTTHUMT00000352248.2
Alternative gene names: ENSG00000242120.2; RP11-231I13.2; OTTHUMG00000158801.2; ENSG00000242120.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1181.9928 coding 
CPAT coding probability 88.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MDFIC2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FRMD4B-2:1
4.0 lnc-FOXP1-6:1
4.1 lnc-FOXP1-6:1
5.0 lnc-FOXP1-6:1
5.1 lnc-FOXP1-15:1
5.2 lnc-MDFIC2-6:1